Publications | University of Wyoming MAGE Lab

Lab member names in bold

A synthetic formula amino acid diet leads to microbiome dysbiosis, reduced colon length, inflammation, and altered locomoter activity in C57BL/6J mice. VJ Mancilla, PN Braden-Kuhle, KN Brice, AE Mann, MT Williams, Y Zhang, MJ Chumley, RC Barber, SN White, GW Boehm, MS Allen. Microorganisms. 2023
Impact of HIV on the oral microbiome of children living in Sub-Saharan Africa, Determined by using an rpoC gene fragment metataxonomic approach. AE Mann, LM O’Connell, E Osagie, P Akhigbe, O Obuekwe, A Omoigberale, C Kelly, M Coker, VP Richards. Microbiology Spectrum. 2023
The eukaryome of African children is influenced by geographic location, gut biogeography, and nutritional status. P Vonaesch, V Billy, AE Mann, E Morien, A Habib, JM Collard M Dédé, N Kapel, PJ Sansonetti, L Parfrey. microLife. 2023
Do I have something in my teeth? The trouble with genetic analyses of diet from archaeological dental calculus. AE Mann, JA Fellows Yates, Z Fagernäs, RM Austin, EA Nelson, CA Hofman. Quaternary International. 2023

Dental caries and its association with the oral microbiomes and HIV in young children - Nigeria (DOMHaIN): a cohort study. MO Coker, P Akhigbe, E Osagie, NL Idemudia, O Igedegbe, N Chukwumah, R Adebiyi, AE Mann, LM O’Connell, O Obuekwe, A Omoigberale, M Charurat, VP Richards. BMC Oral Health. 2021
The evolution and changing ecology of the African hominid oral microbiome. JA Fellows Yates, IM Velsko, F Aron, C Posth, CA Hofman, RM Austin, CE Parker, AE Mann, K Nägele, K Weedman Arthur, JW Arthur, CC Bauer, I Crevecoeur, C Cupillard, MC Curtis, L Dalén, M Díaz-Zorita Bonilla, JC Díez Fernández-Lomana, DG Drucker, E Escribano Escrivá, M Francken, VE Gibbon, M Gonzalez Morales, A Grande Mateu, K Harvati, AG Henry, L Humphrey, M Menéndez, D Mihailović, M Peresani, S Rodríguez Moroder, M Roksandic, H Rougier, S Sázelová, JT Stock, G Straus, J Svoboda, B Teßmann, MJ Walker, RC Power, CM Lewis, K Sankaranarayanan, K Guschanski, R Wrangham, FE Dewhirst, DC Salazar-Garcia, J Krause, A Herbig, C Warinner. PNAS. 2021

Comparison of the bacterial gut microbiome of North American Trypanosoma spp. with and without Trypanosoma cruzi. AE Mann, EA Mitchell, Y Zhang, R Curtis-Robles, S Thapa, SA Hamer, MS Allen. Frontiers in Microbiology. 2020
Biodiversity of protists and nematodes in the wild non-human primate gut. AE Mann, F Mazel, MA Lemay, E Morien, V Billy, M Kowalewski, A Di Fiore, A Link, TL Goldberg, S Tecot, AL Baden, A Gomez, ML Sauther, FP Cuozzo, GAO Rice, NJ Dominy, R Stumpf, RJ Lewis, L Swedell, K Amato, L Parfrey. The ISME Journal. 2020

The efficacy of whole genome capture on ancient dental calculus and dentin. KA Ziesemer, J Ramos-Madrigal, AE Mann, BW Brandt, K Sankaranarayanan, AT Ozga, M Hoogland, CA Hofman, DC Salazar-Garcia, B Frohlich, GR Milner, AC Stone, M Aldenderfer, CM Lewis, CL Hofman, C Warinner, H Schroeder. American Journal of Physical Anthropology. 2019

Differential preservation of endogenous human and microbial DNA in dental calculus and dentin. AE Mann, S Sabin, KA Ziesemer, Å Vågene, H Schroeder, A Ozga, K Sankaranarayanan, CA hofman, JA Fellows Yates, DC Salazar-Garcia, B Frohlich, M Aldenderfer, M Hoogland, C Read, J Krause, C Hofman, K Bos, C Warinner. Scientific Reports. 2018

A robust framework for microbial archaeology. C Warinner, A Herbig, AE Mann, JA Fellows Yates, CL Weiss, HA Burbano, L Orlando, J Krause. Annual Review of Genomics and Human Genetics. 2017

Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification. KA Ziesemer, AE Mann K Sankaranarayanan, H Schroeder, A Ozga, BW Brandt, E Zaura, A Waters-Rist, M Hoogland, DC Salazar-Garcia, M Aldenderfer, C Speller, J Hendy, DA Weston, SJ MacDonald, GH Thomas, MJ Collins, CM Lewis, C Hofman, C Warinner. Scientific Reports. 2015